|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C4p_exo anti |
|
A9 : A C3p_endo syn |
|
A10 : A C4p_exo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward pairing |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A13 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A7 : C-A O2P/Bh pairing |
|
A5-A12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A7 : C-A O2P/Hh adjacent_5p pairing |
|
A6-A11 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A10 : A-A Ss/Wh pairing antiparallel cis one_hbond 40 |
|
A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing |
|
A10-A11 : A-G O2'/C8 adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C4p_exo anti |
|
A9 : A C3p_endo syn |
|
A10 : A C4p_exo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward pairing |
|
A10-A11 : adjacent_5p upward pairing |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A1-A17 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A13 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A7 : C-A O2P/Bh pairing |
|
A5-A12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A7 : C-A O2P/Hh adjacent_5p upward pairing |
|
A6-A11 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A10 : A-A Ss/Wh O2'/Ww pairing antiparallel trans one_hbond 40 |
|
A10-A11 : A-G O2'/C8 adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C4p_exo anti |
|
A9 : A C3p_exo anti |
|
A10 : A C4p_exo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A13 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A8 : C-G O2P/Bs pairing |
|
A6-A11 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : A-G Hh/Sw Ss/O2' adjacent_5p pairing antiparallel cis one_hbond |
|
A7-A9 : A-A O2'/Bh pairing |
|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C4p_exo anti |
|
A9 : A C3p_endo syn |
|
A10 : A C4p_exo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward pairing |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A13 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A7 : C-A O2P/Bh pairing |
|
A5-A12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A7 : C-A O2P/Hh adjacent_5p pairing |
|
A6-A11 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A10 : A-A Ss/Wh pairing antiparallel cis one_hbond 40 |
|
A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing |
|
A10-A11 : A-G O2'/C8 adjacent_5p upward pairing |
|
|
