|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C4p_exo anti |
|
A6 : A C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B13 : C C2p_exo anti |
|
B14 : G C3p_endo anti |
|
B15 : C C2p_exo anti |
|
B16 : G C3p_endo anti |
|
B17 : A C3p_endo anti |
|
B18 : A C2p_exo anti |
|
B19 : U C4p_exo anti |
|
B20 : U C3p_endo anti |
|
B21 : A C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : C C3p_endo anti |
|
B24 : G C3p_endo anti |
|
A25 : HOH |
|
A26 : HOH |
|
A31 : HOH |
|
A33 : HOH |
|
A42 : HOH |
|
A43 : HOH |
|
A44 : HOH |
|
A45 : HOH |
|
A46 : HOH |
|
A47 : HOH |
|
A48 : HOH |
|
A49 : HOH |
|
A50 : HOH |
|
A51 : HOH |
|
A52 : HOH |
|
A53 : HOH |
|
A56 : HOH |
|
A61 : HOH |
|
A62 : HOH |
|
A70 : HOH |
|
A75 : HOH |
|
A76 : HOH |
|
A77 : HOH |
|
A78 : HOH |
|
A80 : HOH |
|
A81 : HOH |
|
A82 : HOH |
|
A83 : HOH |
|
A84 : HOH |
|
A85 : HOH |
|
A86 : HOH |
|
A87 : HOH |
|
A88 : HOH |
|
A89 : HOH |
|
A91 : HOH |
|
A94 : HOH |
|
A96 : HOH |
|
A98 : HOH |
|
A99 : HOH |
|
A100 : HOH |
|
A103 : HOH |
|
A104 : HOH |
|
A105 : HOH |
|
A106 : HOH |
|
A107 : HOH |
|
A111 : HOH |
|
A112 : HOH |
|
A113 : HOH |
|
A114 : HOH |
|
A116 : HOH |
|
A117 : HOH |
|
A120 : HOH |
|
A121 : HOH |
|
B27 : HOH |
|
B28 : HOH |
|
B29 : HOH |
|
B30 : HOH |
|
B32 : HOH |
|
B34 : HOH |
|
B35 : HOH |
|
B36 : HOH |
|
B37 : HOH |
|
B38 : HOH |
|
B39 : HOH |
|
B40 : HOH |
|
B41 : HOH |
|
B54 : HOH |
|
B55 : HOH |
|
B57 : HOH |
|
B58 : HOH |
|
B59 : HOH |
|
B60 : HOH |
|
B63 : HOH |
|
B64 : HOH |
|
B65 : HOH |
|
B66 : HOH |
|
B67 : HOH |
|
B68 : HOH |
|
B69 : HOH |
|
B71 : HOH |
|
B72 : HOH |
|
B73 : HOH |
|
B74 : HOH |
|
B79 : HOH |
|
B90 : HOH |
|
B92 : HOH |
|
B93 : HOH |
|
B95 : HOH |
|
B97 : HOH |
|
B101 : HOH |
|
B102 : HOH |
|
B108 : HOH |
|
B109 : HOH |
|
B110 : HOH |
|
B115 : HOH |
|
B118 : HOH |
|
B119 : HOH |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B24 : outward |
|
A12-B14 : outward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B21 : G-A Ww/Ww pairing antiparallel cis VIII |
|
A5-B20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B18 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B16 : A-G Ww/Ww pairing antiparallel cis VIII |
|
A10-B15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
|
