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Residue conformations |
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A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
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A3 : A C3p_endo anti |
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A4 : C C3p_endo anti |
|
A5 : A C2p_exo anti |
|
A6 : G C3p_endo anti |
|
A7 : A C3p_endo anti |
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A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : G C3p_endo anti |
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A12 : A C3p_endo anti |
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A13 : G C3p_endo anti |
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B14 : G C3p_endo anti |
|
B15 : C C3p_endo anti |
|
B16 : T C3p_endo anti |
|
B17 : C C3p_endo anti |
|
B18 : C C3p_endo anti |
|
B19 : C C4p_exo anti |
|
B20 : A O4p_endo anti |
|
B21 : G C2p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : C C4p_exo anti |
|
B24 : T C2p_endo anti |
|
B25 : A C3p_exo anti |
|
B26 : G C2p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : T C2p_endo anti |
|
B29 : A C3p_exo syn |
|
B30 : C C1p_exo anti |
|
B31 : A C1p_exo anti |
|
B32 : A C1p_exo syn |
|
B33 : C C2p_endo anti |
|
B34 : G C2p_endo anti |
|
B35 : A C2p_endo anti |
|
B36 : C C2p_exo anti |
|
B37 : T C3p_endo anti |
|
B38 : G C3p_endo anti |
|
B39 : T C3p_endo anti |
|
B40 : C C3p_endo anti |
|
B41 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B27-B28 : adjacent_5p upward |
|
B31-B32 : adjacent_5p inward |
|
B33-B34 : adjacent_5p upward |
|
B34-B35 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-B38 : outward |
|
B29-B31 : upward |
|
Number of stackings = 28 |
|
Number of adjacent stackings = 26 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-B41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B40 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B39 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A5-B37 : A-T Ww/Ws pairing antiparallel cis |
|
A6-B36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B28-B29 : T-A O2P/Bh adjacent_5p pairing |
|
B28-B35 : T-A Ww/Ww pairing antiparallel cis |
|
B29-B33 : A-C Ss/Hw pairing antiparallel trans one_hbond 72 |
|
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